programming

Python, Haskell, C

machine learning

PyTorch, scikit-learn

wet lab

cell culture & MTT assay, laser ablation in liquids, PCR, gel electrophoresis, nucleic acid and protein extraction

characterisation & imaging

DLS & zeta potential, UV-Vis spectrophotometry, fluorescence spectroscopy, scanning electron microscopy (SEM), confocal microscopy

computational biology & biophysics

molecular dynamics simulations, GROMACS, OpenMM, MDAnalysis, MDTraj, anisotropic network model (ANM), protein structure prediction (AlphaFold, ColabFold)

drug discovery applications

molecular docking (AutoDock Vina, CB-Dock2), in silico screening, Cell Painting assay

scientific software

CellProfiler, ChimeraX, VMD, PyMOL, BioRender, Inkscape

tools & infrastructure

Linux, bash, git, conda/mamba, Jupyter, AI-assisted development (vibe coding)